Loading README.md +14 −6 Original line number Diff line number Diff line Loading @@ -9,12 +9,20 @@ Drag the download file to the Fiji plugins folder ## Usage - Launch Fiji - Open and run "First_Step_ReadAndReduceHyperstack.ijm" script - Open and run "First_Step_ReadAndReduceHyperstack.ijm" script. This script allows to dertmine the z limits of each 3d image - Open and run "Second_Step_DrawAndAnalyze.ijm" script The first step in this script is manual, it execute segmentation-editor. To use segmentation-editor, please, read this [page](https://imagej.net/plugins/segmentation-editor) The second step (compute 3d volume) is automatic - once the script is finished in the results folder, there is a file with the saved results and a folder with illustration images. - Open and run "Second_Step_DrawAndAnalyze.ijm" script. The first step in this script is manual, it uses segmentation-editor. To learn at use segmentation-editor, please, read this [page](https://imagej.net/plugins/segmentation-editor) The second step (compute 3d volume) is automatic. - Once the script is finished in the results folder, there is a file with the saved results and a folder with illustration images. # Demo video A video to illustrate application was showed : [Read](https://git.unicaen.fr/nicolas.elie/phyto_confocal_2023/-/blob/master/phyto_confocal_2023.webm) Loading
README.md +14 −6 Original line number Diff line number Diff line Loading @@ -9,12 +9,20 @@ Drag the download file to the Fiji plugins folder ## Usage - Launch Fiji - Open and run "First_Step_ReadAndReduceHyperstack.ijm" script - Open and run "First_Step_ReadAndReduceHyperstack.ijm" script. This script allows to dertmine the z limits of each 3d image - Open and run "Second_Step_DrawAndAnalyze.ijm" script The first step in this script is manual, it execute segmentation-editor. To use segmentation-editor, please, read this [page](https://imagej.net/plugins/segmentation-editor) The second step (compute 3d volume) is automatic - once the script is finished in the results folder, there is a file with the saved results and a folder with illustration images. - Open and run "Second_Step_DrawAndAnalyze.ijm" script. The first step in this script is manual, it uses segmentation-editor. To learn at use segmentation-editor, please, read this [page](https://imagej.net/plugins/segmentation-editor) The second step (compute 3d volume) is automatic. - Once the script is finished in the results folder, there is a file with the saved results and a folder with illustration images. # Demo video A video to illustrate application was showed : [Read](https://git.unicaen.fr/nicolas.elie/phyto_confocal_2023/-/blob/master/phyto_confocal_2023.webm)
