2. Once your annotations are done, use the script "_Export Annotations gson.groovy_" to export the annotations as a json file in Qupath.
3. Then use the python program "_JSON_Qupath_to_ImageLabel.ipynb_" which will allow to format the images and annotations so that they can be used by the program "_Model_Build.ipynb_." This program is directly from an example provided on the github Stardist repository.
3. Then use the python program "_JSON_Qupath_to_ImageLabel.ipynb_" which will allow to format the images and annotations so that they can be used by the program "_Model_Build.ipynb_."
It is possible to test code with a small series with images examples :
- _Examples/0001.tif_ and _Examples/0001b.tif_
- JSON files on _Examples/qupathProject/ExportJSON_
It is possible to test code with a small series with images examples : _Examples/0001.tif_ and _Examples/0001b.tif_ and JSON files on _Examples/qupathProject/ExportJSON_
It is possible to test code with a small series with images examples : 0001.tif and 0001b.tif and JSON files